IL_9QQA_136

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9QQA|1|B5|U|1090

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_136 not in the Motif Atlas

Geometric match to IL_8P9A_427

Geometric discrepancy: 0.3317

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9QQA|1|B5|C|1011
9QQA|1|B5|C|1012
*
9QQA|1|B5|G|1089
9QQA|1|B5|U|1090
9QQA|1|B5|G|1091

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BS

Large ribosomal subunit protein eL20

Chain BT

60S ribosomal protein L21