IL_9QQA_144

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

9QQA|1|B5|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_144 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.256

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9QQA|1|B5|G|1390
9QQA|1|B5|C|1391
9QQA|1|B5|C|1392
*
9QQA|1|B5|G|1403
9QQA|1|B5|C|1404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BQ

eL18

Chain Bb

60S ribosomal protein L29