IL_9QQA_145

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9QQA|1|B5|A|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_145 not in the Motif Atlas

Geometric match to IL_8P9A_252

Geometric discrepancy: 0.1173

The information below is about IL_8P9A_252

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9QQA|1|B5|C|1422
9QQA|1|B5|C|1423
*
9QQA|1|B5|G|1451
9QQA|1|B5|A|1452
9QQA|1|B5|G|1453

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

eL18

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29