IL_9QQA_152

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_152 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1141

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9QQA|1|B5|C|1506
9QQA|1|B5|G|1507
9QQA|1|B5|A|1508
9QQA|1|B5|A|1509
9QQA|1|B5|G|1510
*
9QQA|1|B5|U|1527
9QQA|1|B5|G|1528
9QQA|1|B5|G|1529
9QQA|1|B5|A|1530
9QQA|1|B5|G|1531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a