IL_9QQA_178

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9QQA|1|B5|A|1941

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_178 not in the Motif Atlas

Geometric match to IL_8P9A_284

Geometric discrepancy: 0.1706

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9QQA|1|B5|G|1940
9QQA|1|B5|A|1941
9QQA|1|B5|G|1942
9QQA|1|B5|U|1943
9QQA|1|B5|G|1944
*
9QQA|1|B5|C|1953
9QQA|1|B5|U|1954
9QQA|1|B5|C|1955

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12