IL_9QQA_196
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9QQA|1|B5|U|2504, 9QQA|1|B5|A|2517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_196 not in the Motif Atlas
- Geometric match to IL_8P9A_301
- Geometric discrepancy: 0.164
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9QQA|1|B5|U|2499
9QQA|1|B5|G|2500
9QQA|1|B5|G|2501
9QQA|1|B5|A|2502
9QQA|1|B5|A|2503
9QQA|1|B5|U|2504
9QQA|1|B5|G|2505
*
9QQA|1|B5|C|2515
9QQA|1|B5|G|2516
9QQA|1|B5|A|2517
9QQA|1|B5|G|2518
9QQA|1|B5|A|2519
9QQA|1|B5|G|2520
9QQA|1|B5|A|2521
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Am
- Small ribosomal subunit protein uS15
- Chain BR
- Ribosomal protein L19
- Chain BZ
- 60S ribosomal protein L27
- Chain Bc
- 60S ribosomal protein L30
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- 60S ribosomal protein L37a
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