IL_9QQA_203

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9QQA|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_203 not in the Motif Atlas

Geometric match to IL_8CRE_084

Geometric discrepancy: 0.1008

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9QQA|1|B5|C|2710
9QQA|1|B5|G|2711
9QQA|1|B5|U|2712
9QQA|1|B5|A|2713
9QQA|1|B5|A|2714
9QQA|1|B5|C|2715
*
9QQA|1|B5|G|2720
9QQA|1|B5|G|2721
9QQA|1|B5|A|2722
9QQA|1|B5|U|2723
9QQA|1|B5|A|2724
9QQA|1|B5|A|2725
9QQA|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

Small ribosomal subunit protein eS32

Chain Bp

60S ribosomal protein L37a