IL_9QQA_207

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9QQA|1|B5|A|3395, 9QQA|1|B5|U|3411, 9QQA|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_207 not in the Motif Atlas

Geometric match to IL_8P9A_311

Geometric discrepancy: 0.0852

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QQA|1|B5|C|3392
9QQA|1|B5|G|3393
9QQA|1|B5|A|3394
9QQA|1|B5|A|3395
9QQA|1|B5|G|3396
9QQA|1|B5|G|3397
*
9QQA|1|B5|U|3409
9QQA|1|B5|G|3410
9QQA|1|B5|U|3411
9QQA|1|B5|U|3412
9QQA|1|B5|G|3413
9QQA|1|B5|A|3414
9QQA|1|B5|C|3415
9QQA|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a