IL_9QQA_214

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9QQA|1|B5|A2M|3517, 9QQA|1|B5|C|3523, 9QQA|1|B5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_214 not in the Motif Atlas

Geometric match to IL_8CRE_095

Geometric discrepancy: 0.1254

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9QQA|1|B5|C|3513
9QQA|1|B5|5MC|3514
9QQA|1|B5|A|3515
9QQA|1|B5|A|3516
9QQA|1|B5|A2M|3517
9QQA|1|B5|U|3518
9QQA|1|B5|G|3519
9QQA|1|B5|C|3520
9QQA|1|B5|C|3521
9QQA|1|B5|U|3522
9QQA|1|B5|C|3523
9QQA|1|B5|OMG|3524
*
9QQA|1|B5|OMC|3540
9QQA|1|B5|G|3541
9QQA|1|B5|C|3542
9QQA|1|B5|G|3543

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

Small ribosomal subunit protein eS32