IL_9QQA_219

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9QQA|1|B5|G|3929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_219 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9QQA|1|B5|U|3659
9QQA|1|B5|A|3660
9QQA|1|B5|G|3661
*
9QQA|1|B5|U|3927
9QQA|1|B5|G|3928
9QQA|1|B5|G|3929
9QQA|1|B5|G|3930

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

Ribosomal protein L15

Chain Bo

Large ribosomal subunit protein eL42