IL_9QQA_229

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGC(PSU)*GA(PSU)CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_229 not in the Motif Atlas

Geometric match to IL_8CRE_111

Geometric discrepancy: 0.1254

The information below is about IL_8CRE_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9QQA|1|B5|G|4146
9QQA|1|B5|G|4147
9QQA|1|B5|C|4148
9QQA|1|B5|PSU|4149
*
9QQA|1|B5|G|4186
9QQA|1|B5|A|4187
9QQA|1|B5|PSU|4188
9QQA|1|B5|C|4189
9QQA|1|B5|C|4190

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29