IL_9QQA_231

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9QQA|1|B5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_231 not in the Motif Atlas

Geometric match to IL_8P9A_332

Geometric discrepancy: 0.1291

The information below is about IL_8P9A_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9QQA|1|B5|G|4151
9QQA|1|B5|U|4152
9QQA|1|B5|G|4153
*
9QQA|1|B5|U|4181
9QQA|1|B5|U|4182
9QQA|1|B5|U|4183
9QQA|1|B5|U|4184
9QQA|1|B5|U|4185

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10