IL_9QQA_234

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

9QQA|1|B5|G|4268, 9QQA|1|B5|A2M|4269

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_234 not in the Motif Atlas

Geometric match to IL_8P9A_335

Geometric discrepancy: 0.0912

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9QQA|1|B5|OMC|4202
9QQA|1|B5|PSU|4203
9QQA|1|B5|C|4204
*
9QQA|1|B5|G|4266
9QQA|1|B5|PSU|4267
9QQA|1|B5|G|4268
9QQA|1|B5|A2M|4269
9QQA|1|B5|G|4270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23