IL_9QQA_248

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9QQA|1|B5|A|4402, 9QQA|1|B5|U|4403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_248 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.178

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9QQA|1|B5|U|4387
9QQA|1|B5|U|4388
*
9QQA|1|B5|A|4401
9QQA|1|B5|A|4402
9QQA|1|B5|U|4403
9QQA|1|B5|G|4404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bd

60S ribosomal protein L31