IL_9QQA_253

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

9QQA|1|B5|C|4504, 9QQA|1|B5|U|4505, 9QQA|1|B5|A|4511, 9QQA|1|B5|G|4609, 9QQA|1|B5|C|4610, 9QQA|1|B5|G|4612, 9QQA|1|B5|A|4615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQA|1|B5|C|4503
9QQA|1|B5|C|4504
9QQA|1|B5|U|4505
9QQA|1|B5|C|4506
9QQA|1|B5|G|4507
9QQA|1|B5|G|4508
9QQA|1|B5|A|4509
9QQA|1|B5|U|4510
9QQA|1|B5|A|4511
9QQA|1|B5|G|4512
9QQA|1|B5|C|4513
*
9QQA|1|B5|G|4607
9QQA|1|B5|U|4608
9QQA|1|B5|G|4609
9QQA|1|B5|C|4610
9QQA|1|B5|G|4611
9QQA|1|B5|G|4612
9QQA|1|B5|A|4613
9QQA|1|B5|G|4614
9QQA|1|B5|A|4615
9QQA|1|B5|G|4616

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BH

60S ribosomal protein L9

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain BS

Large ribosomal subunit protein eL20