IL_9QQA_261

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

9QQA|1|B5|G|4788

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_261 not in the Motif Atlas

Geometric match to IL_8CRE_138

Geometric discrepancy: 0.2094

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9QQA|1|B5|G|4739
9QQA|1|B5|PSU|4740
9QQA|1|B5|U|4741
*
9QQA|1|B5|G|4784
9QQA|1|B5|U|4785
9QQA|1|B5|C|4786
9QQA|1|B5|A|4787
9QQA|1|B5|G|4788
9QQA|1|B5|C|4789

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Bd

60S ribosomal protein L31