IL_9QQB_015

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9QQB|1|A2|A|314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_015 not in the Motif Atlas

Geometric match to IL_8P9A_388

Geometric discrepancy: 0.1284

The information below is about IL_8P9A_388

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|A2|G|313
9QQB|1|A2|A|314
9QQB|1|A2|U|315
*
9QQB|1|A2|A|337
9QQB|1|A2|C|338

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6