IL_9QQB_019

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

9QQB|1|A2|OMU|429

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_019 not in the Motif Atlas

Geometric match to IL_8CRE_410

Geometric discrepancy: 0.1642

The information below is about IL_8CRE_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9QQB|1|A2|G|412
9QQB|1|A2|G|413
9QQB|1|A2|G|414
*
9QQB|1|A2|C|425
9QQB|1|A2|G|426
9QQB|1|A2|A|427
9QQB|1|A2|U|428
9QQB|1|A2|OMU|429
9QQB|1|A2|C|430

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23