IL_9QQB_055

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9QQB|1|A2|A|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_055 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1419

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|A2|G|1204
9QQB|1|A2|A|1205
*
9QQB|1|A2|U|1695
9QQB|1|A2|A|1696
9QQB|1|A2|C|1697

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain Ab

40S ribosomal protein S2