IL_9QQB_059

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_059 not in the Motif Atlas

Geometric match to IL_8P9A_433

Geometric discrepancy: 0.157

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9QQB|1|A2|G|1236
9QQB|1|A2|G|1237
*
9QQB|1|A2|C|1522
9QQB|1|A2|A|1523
9QQB|1|A2|C|1524

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Ao

Small ribosomal subunit protein uS19

Chain Ar

Small ribosomal subunit protein uS13

Chain Ay

Small ribosomal subunit protein eS25