IL_9QQB_072

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CAUGC*(OMG)AGG

Length

9 nucleotides

Bulged bases

9QQB|1|A2|U|1398

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_072 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3358

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9QQB|1|A2|C|1396
9QQB|1|A2|A|1397
9QQB|1|A2|U|1398
9QQB|1|A2|G|1399
9QQB|1|A2|C|1400
*
9QQB|1|A2|OMG|1448
9QQB|1|A2|A|1449
9QQB|1|A2|G|1450
9QQB|1|A2|G|1451

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein RACK1

Chain Ap

Small ribosomal subunit protein uS9

Chain Aq

Small ribosomal subunit protein eS17

Chain At

Small ribosomal subunit protein uS10