IL_9QQB_092

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_092 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1295

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9QQB|1|A2|C|1743
9QQB|1|A2|G|1744
9QQB|1|A2|G|1745
9QQB|1|A2|A|1746
9QQB|1|A2|U|1747
*
9QQB|1|A2|A|1789
9QQB|1|A2|G|1790
9QQB|1|A2|A|1791
9QQB|1|A2|A|1792
9QQB|1|A2|G|1793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain BW

Ribosomal protein L24