IL_9QQB_111

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_111 not in the Motif Atlas

Geometric match to IL_8CRE_014

Geometric discrepancy: 0.192

The information below is about IL_8CRE_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|B5|G|348
9QQB|1|B5|A|349
9QQB|1|B5|C|350
*
9QQB|1|B8|G|25
9QQB|1|B8|C|26

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BY

Ribosomal protein L26