IL_9QQB_124

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUCUCG*CC

Length

8 nucleotides

Bulged bases

9QQB|1|B5|U|502, 9QQB|1|B5|C|503, 9QQB|1|B5|U|504, 9QQB|1|B5|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_124 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1527

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9QQB|1|B5|G|501
9QQB|1|B5|U|502
9QQB|1|B5|C|503
9QQB|1|B5|U|504
9QQB|1|B5|C|505
9QQB|1|B5|G|506
*
9QQB|1|B5|C|648
9QQB|1|B5|C|649

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BQ

eL18