IL_9QQB_135

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|1124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_135 not in the Motif Atlas

Geometric match to IL_9C75_002

Geometric discrepancy: 0.1902

The information below is about IL_9C75_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9QQB|1|B5|G|988
9QQB|1|B5|G|989
*
9QQB|1|B5|C|1123
9QQB|1|B5|A|1124
9QQB|1|B5|C|1125

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Bb

60S ribosomal protein L29