IL_9QQB_144

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9QQB|1|B5|C|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_144 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.3057

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_42771.1

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|G|1304
9QQB|1|B5|G|1305
*
9QQB|1|B5|C|1320
9QQB|1|B5|G|1321
9QQB|1|B5|C|1322
9QQB|1|B5|C|1323

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15