IL_9QQB_153

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_153 not in the Motif Atlas

Geometric match to IL_8CRE_031

Geometric discrepancy: 0.1167

The information below is about IL_8CRE_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|B5|G|1500
9QQB|1|B5|C|1501
*
9QQB|1|B5|G|1567
9QQB|1|B5|A|1568
9QQB|1|B5|C|1569

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain Bg

60S ribosomal protein L34

Chain Bp

60S ribosomal protein L37a