IL_9QQB_154

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

9QQB|1|B5|G|1532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_154 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1734

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9QQB|1|B5|G|1505
9QQB|1|B5|C|1506
*
9QQB|1|B5|G|1531
9QQB|1|B5|G|1532
9QQB|1|B5|U|1533

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a