IL_9QQB_159

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_159 not in the Motif Atlas

Geometric match to IL_8CRE_037

Geometric discrepancy: 0.0964

The information below is about IL_8CRE_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9QQB|1|B5|U|1626
9QQB|1|B5|U|1627
9QQB|1|B5|U|1628
*
9QQB|1|B5|A|1637
9QQB|1|B5|PSU|1638
9QQB|1|B5|A|1639

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain BQ

eL18

Chain BT

60S ribosomal protein L21

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29