IL_9QQB_180

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9QQB|1|B5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_180 not in the Motif Atlas

Geometric match to IL_8P9A_284

Geometric discrepancy: 0.164

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9QQB|1|B5|G|1940
9QQB|1|B5|A|1941
9QQB|1|B5|G|1942
9QQB|1|B5|U|1943
9QQB|1|B5|G|1944
*
9QQB|1|B5|C|1953
9QQB|1|B5|U|1954
9QQB|1|B5|C|1955

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12