IL_9QQB_181

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9QQB|1|B5|U|2023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_181 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.2295

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9QQB|1|B5|C|2022
9QQB|1|B5|U|2023
9QQB|1|B5|G|2024
*
9QQB|1|B5|C|2115
9QQB|1|B5|G|2116

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BF

Ribosomal Protein uL30

Chain BQ

eL18

Chain Be

Ribosomal protein L32