IL_9QQB_185

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|2156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_185 not in the Motif Atlas

Geometric match to IL_7DLZ_001

Geometric discrepancy: 0.2304

The information below is about IL_7DLZ_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|B5|U|2155
9QQB|1|B5|A|2156
9QQB|1|B5|G|2157
*
9QQB|1|B5|C|2168
9QQB|1|B5|G|2169

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Be

Ribosomal protein L32

Chain Br

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B