IL_9QQB_186

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_186 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.107

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9QQB|1|B5|G|2201
9QQB|1|B5|U|2202
9QQB|1|B5|A|2203
9QQB|1|B5|G|2204
9QQB|1|B5|U|2205
9QQB|1|B5|A2M|2206
9QQB|1|B5|OMG|2207
*
9QQB|1|B5|C|3590
9QQB|1|B5|G|3591
9QQB|1|B5|A|3592
9QQB|1|B5|A|3593
9QQB|1|B5|A|3594
9QQB|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BP

Large ribosomal subunit protein uL22