IL_9QQB_193

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_193 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.202

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9QQB|1|B5|C|2432
9QQB|1|B5|G|2433
9QQB|1|B5|A|2434
9QQB|1|B5|U|2435
9QQB|1|B5|C|2436
*
9QQB|1|B5|G|2595
9QQB|1|B5|G|2596
9QQB|1|B5|G|2597
9QQB|1|B5|A|2598
9QQB|1|B5|G|2599

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34