IL_9QQB_209

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9QQB|1|B5|A|3395, 9QQB|1|B5|U|3411, 9QQB|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_209 not in the Motif Atlas

Geometric match to IL_8P9A_311

Geometric discrepancy: 0.0885

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9QQB|1|B5|C|3392
9QQB|1|B5|G|3393
9QQB|1|B5|A|3394
9QQB|1|B5|A|3395
9QQB|1|B5|G|3396
9QQB|1|B5|G|3397
*
9QQB|1|B5|U|3409
9QQB|1|B5|G|3410
9QQB|1|B5|U|3411
9QQB|1|B5|U|3412
9QQB|1|B5|G|3413
9QQB|1|B5|A|3414
9QQB|1|B5|C|3415
9QQB|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a