IL_9QQB_225
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9QQB|1|B5|G|3812, 9QQB|1|B5|G|3814, 9QQB|1|B5|G|3815, 9QQB|1|B5|C|3908, 9QQB|1|B5|U|3909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQB_225 not in the Motif Atlas
- Geometric match to IL_8CRE_106
- Geometric discrepancy: 0.1794
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
9QQB|1|B5|G|3810
9QQB|1|B5|U|3811
9QQB|1|B5|G|3812
9QQB|1|B5|A|3813
9QQB|1|B5|G|3814
9QQB|1|B5|G|3815
9QQB|1|B5|C|3816
*
9QQB|1|B5|G|3907
9QQB|1|B5|C|3908
9QQB|1|B5|U|3909
9QQB|1|B5|C|3910
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BG
- 60S ribosomal protein L7a
- Chain BX
- Large ribosomal subunit protein uL23
Coloring options: