IL_9QQB_226

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

9QQB|1|B5|C|3824

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_226 not in the Motif Atlas

Geometric match to IL_8GLP_178

Geometric discrepancy: 0.2862

The information below is about IL_8GLP_178

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9QQB|1|B5|G|3823
9QQB|1|B5|C|3824
9QQB|1|B5|G|3825
*
9QQB|1|B5|C|3840
9QQB|1|B5|U|3841

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain BA

Large ribosomal subunit protein uL2

Chain BG

60S ribosomal protein L7a

Chain Bg

60S ribosomal protein L34