IL_9QQB_229

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|3949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_229 not in the Motif Atlas

Geometric match to IL_8P9A_325

Geometric discrepancy: 0.109

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|B5|G|3937
9QQB|1|B5|A|3938
*
9QQB|1|B5|U|3948
9QQB|1|B5|A|3949
9QQB|1|B5|C|3950

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29

Chain Bo

Large ribosomal subunit protein eL42