IL_9QQB_230

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_230 not in the Motif Atlas

Geometric match to IL_7MKY_001

Geometric discrepancy: 0.2564

The information below is about IL_7MKY_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9QQB|1|B5|G|4037
9QQB|1|B5|A|4038
9QQB|1|B5|PSU|4039
*
9QQB|1|B5|A|4063
9QQB|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bb

60S ribosomal protein L29

Chain Bo

Large ribosomal subunit protein eL42