IL_9QQB_235

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9QQB|1|B5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_235 not in the Motif Atlas

Geometric match to IL_8CRE_113

Geometric discrepancy: 0.1319

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9QQB|1|B5|G|4151
9QQB|1|B5|U|4152
9QQB|1|B5|G|4153
*
9QQB|1|B5|U|4181
9QQB|1|B5|U|4182
9QQB|1|B5|U|4183
9QQB|1|B5|U|4184
9QQB|1|B5|U|4185

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10