IL_9QQB_242

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9QQB|1|B5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_242 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.388

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|U|4214
9QQB|1|B5|U|4215
9QQB|1|B5|G|4216
*
9QQB|1|B5|C|4231
9QQB|1|B5|C|4232
9QQB|1|B5|A|4233
9QQB|1|B5|A|4234
9QQB|1|B5|G|4235

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Large ribosomal subunit protein uL13

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein