IL_9QQB_256

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

9QQB|1|B5|C|4504, 9QQB|1|B5|U|4505, 9QQB|1|B5|A|4511, 9QQB|1|B5|G|4609, 9QQB|1|B5|C|4610, 9QQB|1|B5|G|4612, 9QQB|1|B5|A|4615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|B5|C|4503
9QQB|1|B5|C|4504
9QQB|1|B5|U|4505
9QQB|1|B5|C|4506
9QQB|1|B5|G|4507
9QQB|1|B5|G|4508
9QQB|1|B5|A|4509
9QQB|1|B5|U|4510
9QQB|1|B5|A|4511
9QQB|1|B5|G|4512
9QQB|1|B5|C|4513
*
9QQB|1|B5|G|4607
9QQB|1|B5|U|4608
9QQB|1|B5|G|4609
9QQB|1|B5|C|4610
9QQB|1|B5|G|4611
9QQB|1|B5|G|4612
9QQB|1|B5|A|4613
9QQB|1|B5|G|4614
9QQB|1|B5|A|4615
9QQB|1|B5|G|4616

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BH

60S ribosomal protein L9

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain BS

Large ribosomal subunit protein eL20