IL_9QQQ_013
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9QQQ|1|A|U|244, 9QQQ|1|A|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_013 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.1477
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9QQQ|1|A|G|242
9QQQ|1|A|A|243
9QQQ|1|A|U|244
9QQQ|1|A|U|245
9QQQ|1|A|A|246
9QQQ|1|A|G|247
*
9QQQ|1|A|C|277
9QQQ|1|A|G|278
9QQQ|1|A|A|279
9QQQ|1|A|C|280
9QQQ|1|A|G|281
9QQQ|1|A|A|282
9QQQ|1|A|U|283
9QQQ|1|A|C|284
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain Q
- Small ribosomal subunit protein uS17
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