IL_9QQQ_015

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_015 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1176

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9QQQ|1|A|G|292
9QQQ|1|A|G|293
*
9QQQ|1|A|U|304
9QQQ|1|A|G|305
9QQQ|1|A|A|306
9QQQ|1|A|C|307
9QQQ|1|A|C|308

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16