IL_9QQQ_019
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_019 not in the Motif Atlas
- Geometric match to IL_8B0X_019
- Geometric discrepancy: 0.1311
- The information below is about IL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
9QQQ|1|A|U|409
9QQQ|1|A|G|410
9QQQ|1|A|A|411
9QQQ|1|A|A|412
9QQQ|1|A|G|413
9QQQ|1|A|A|414
9QQQ|1|A|A|415
9QQQ|1|A|G|416
*
9QQQ|1|A|U|427
9QQQ|1|A|G|428
9QQQ|1|A|U|429
9QQQ|1|A|A|430
9QQQ|1|A|A|431
9QQQ|1|A|A|432
9QQQ|1|A|G|433
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
Coloring options: