IL_9QQQ_020
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CAG*CAGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_020 not in the Motif Atlas
- Geometric match to IL_8B0X_020
- Geometric discrepancy: 0.076
- The information below is about IL_8B0X_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02111.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9QQQ|1|A|C|440
9QQQ|1|A|A|441
9QQQ|1|A|G|442
*
9QQQ|1|A|C|492
9QQQ|1|A|A|493
9QQQ|1|A|G|494
9QQQ|1|A|A|495
9QQQ|1|A|A|496
9QQQ|1|A|G|497
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
Coloring options: