IL_9QQQ_026
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_026 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1925
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9QQQ|1|A|C|580
9QQQ|1|A|G|581
9QQQ|1|A|C|582
9QQQ|1|A|A|583
9QQQ|1|A|G|584
*
9QQQ|1|A|U|757
9QQQ|1|A|C|758
9QQQ|1|A|A|759
9QQQ|1|A|G|760
9QQQ|1|A|G|761
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: