IL_9QQQ_029
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 9QQQ|1|A|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_029 not in the Motif Atlas
- Homologous match to IL_6CZR_408
- Geometric discrepancy: 0.5583
- The information below is about IL_6CZR_408
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9QQQ|1|A|U|605
9QQQ|1|A|G|606
9QQQ|1|A|A|607
9QQQ|1|A|A|608
9QQQ|1|A|A|609
9QQQ|1|A|U|610
9QQQ|1|A|C|611
9QQQ|1|A|C|612
*
9QQQ|1|A|G|628
9QQQ|1|A|A|629
9QQQ|1|A|A|630
9QQQ|1|A|C|631
9QQQ|1|A|U|632
9QQQ|1|A|G|633
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain H
- Small ribosomal subunit protein uS8
- Chain P
- Small ribosomal subunit protein bS16
- Chain Q
- Small ribosomal subunit protein uS17
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