IL_9QQQ_049

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9QQQ|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.062

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9QQQ|1|A|G|1124
9QQQ|1|A|U|1125
9QQQ|1|A|U|1126
9QQQ|1|A|G|1127
9QQQ|1|A|C|1128
*
9QQQ|1|A|G|1144
9QQQ|1|A|A|1145
9QQQ|1|A|A|1146
9QQQ|1|A|C|1147
9QQQ|1|A|U|1148
9QQQ|1|A|C|1149

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10