IL_9QQQ_112
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CGAGG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_112 not in the Motif Atlas
- Homologous match to IL_7A0S_049
- Geometric discrepancy: 0.2528
- The information below is about IL_7A0S_049
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.2
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9QQQ|1|a|C|1357
9QQQ|1|a|G|1358
9QQQ|1|a|A|1359
9QQQ|1|a|G|1360
9QQQ|1|a|G|1361
*
9QQQ|1|a|C|1370
9QQQ|1|a|G|1371
9QQQ|1|a|U|1372
9QQQ|1|a|A|1373
9QQQ|1|a|G|1374
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: